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Year

Month

Date

Time (US Eastern)

Host

Topic 1

Speaker 1

Topic 2

Speaker 2

Action Items

 2016

Nov

14

10-11am

Kate

MABC (0:00-26:03 in Recording)


Mike Olsen

Ontology (26:04-46:43 in Recording)


Rosemary
  •  JHI-GOBII-Tool development to support use cases for seed purity and line pedigree verification
  •  Ontology small group: CIMMYT- germplasm; ICRISAT- marker; IRRI-crop research?

 

Dec

12

9-10 pm

Carlos

B4R Demo CANCELLED


Argem FloresNANA

2017

Jan

9

10-11am

HTPG

View file
nameHTPG project update- Enghwa.pdf
height250

Play recording

Eng Hwa NG

<N.Enghwa@cgiar.org>

INTERTEK data output

Intertek HTPG

View file
nameIntertek HTPG GOBII meeting 9 Jan 2017.pdf
height250

Play recording

Petra van Roggen <petra.vanroggen@intertek.com>
  •  Star Yanxin Gao and Liz set up subsequent meetings with Eng and Petra to follow up 1) HTGP update communication and 2) data sharing and SNP IDs etc. questions.

 

Feb

13

9-10 pm

Star

QTL mapping using RADseq genotyping (30 mins)

Slides can be found:

https://drive.google.com/file/d/0B_23cU_PwG6WOVk4ZkNhWEo1c00/view

Play recording (2:00-33:00 in recording) 

Carlos Ignacio

Genomic Selection in Maize Breeding at CIMMYT

Slides can be found:

View file
nameGOBII Seminar_GS at CIMMYT_Xuecai.pptx
height250


Play recording (33:00-78:00 in recording) 

Xuecai Zhang 

 

Mar

13

10-11am

Cinta

Panzea curation, GOBII TASSEL (60 min)

View file
nameEdGOBII170309.pdf
height250

https://www.dropbox.com/s/cbxur1q5rei3bgi/Buckler%20Group%20Update_03132017.zip?dl=0
Buckler GroupPanzea curation, GOBII TASSEL (60 min)Buckler Group 

 

Apr

10

9-10 pm

 Gene Expression AtlasHima

 

 

May

8

10-11am

 Star

Cornell Genotyping and LIMS

View file
nameGDF_SLIMS_gobii_20170508.pdf
height250

https://www.dropbox.com/s/m5uyzccensnjmcn/GOBII%20Seminar%2005092017%20by%20Dr.%20Qi%20Sun.mp4?dl=0

(60 min)

Qi Sun

Same

Qi Sun 

 

June

12

9-10 pm

 Star

Prediction and Breeding Design by Simulation Tools (60 min)


View file
nameGOBII-Simulation Prediction and Desin-Wang.pdf
height250


Jiankang_Wang_June 12_2017_GOBII_Seminar_recording.zip

WANG Jiankang <wangjiankang@caas.cn>Same
 

 

July

10

10-11am

 Star

Updates on using BrAPI as a data source

View file
nameSimon_Reinhard_brapi_R GOBII.pdf
height250
Reinhard SimonSame
 

 

Aug

7

9-10 pm

 Will present at GOBII annual meetingMaul

 

 

Sept

11

10-11am

 

CANCELLED




 

 

Oct

9

9-10 pm

 CENCELLED


 

 

Nov

13

10-11am

 Star

Maize genotyping pipeline

View file
name11.20.2017_GOBII_Seminar_Maize_HapMap3_Robert_Bukowski.pdf
height250

Robert Bukowski <bukowski@cornell.edu>
Robert Bukowski <bukowski@cornell.edu> 

 

Dec

11

9-10 pm

 Star

 Bottom-up Approach to Increasing Plant Breeding Efficiency in Africa

171211_Bottom-up Approach to Increaseing Plant Breeding Efficiency in Africa-MRagot.oxps

 Michel Ragot <michelragot@nfgene.com>   

2018

Jan

8

9-10 pm

 Star

 Application of GOBII and Molecular Breeding in IRRI's Irrigated Breeding Pipeline (60 min)

Jan_8th_seminar_Josh.Cobb.zip

View file
nameGOBii seminar_Cobb.pdf
height250


Joshua Nathaniel Cobb <j.cobb@irri.org>   

 

Feb

12

10-11am

 Star

Achievements of large scale deployment of rAmSeq sequencing technology in maize genomic selection and 2018 implementation plan (60 min)

View file
nameFeb 12 GOBii Seminar-rAmpSeq CIMMYT GS_MO and Team.pdf
height250

OLSEN, Michael Scott (CIMMYT-Kenya) <M.Olsen@cgiar.org>, Xuecai Zhang, Manje Gowda, Yoseph Beyenne, and team

   

 

Mar

12

10-11am

 Kate

Help! My data are a out of control! Novel services for management of distributed data

March GOBii monthly seminar recording

View file
nameWalls_GOBII2018 (2).pdf
height250



 Ramona L. Walls <rwalls@cyverse.org>   

 

Apr

9

10-11am

 Kate

Information management Support Tools for Breeding (Case: Potato)

https://youtu.be/f0xQEmxaTO4

View file
name4.9.2018GOBii_CIP seminarPresentation_EiB Module 5 Seminar (V2).pdf
height250


Salas, Elisa (CIP) <E.SALAS@CGIAR.ORG>,  Molano Jazmin, Arias Raul and RIU Team

   

 

May

14

10-11am

 Kate

 Improving the Predictability of Breeding Programs through an enabling Enterprise Breeding System

https://youtu.be/xKuiA_ShR9U

View file
nameBSys_GOBii_seminar_vfinal.pdf
height250

 HAGEN, Thomas John (CIMMYT) <T.HAGEN@cgiar.org>

   

 

June

11

10-11am

 Star

An Overview of Practical Haplotype Graph (PHG)

YouTube link: https://youtu.be/0NpRGcAxCPs 

PDF Slides: https://drive.google.com/file/d/1CMTn4kk626Noh8PWULM_7rf22UvuLCis/view?usp=sharing


Ramu Punna <rp444@cornell.edu>    

 

July

9

10-11am

 Susanne

 CIMMYT wheat program's experience in implementation of Genomic Selection: status and prospects

YouTube link: https://youtu.be/V1khVBOCjak

PDF Slides:

View file
nameCIMMYT Wheat Genomic Selection-7.9.2018 GOBii webinar.pdf
height250

ROSYARA, Umesh (CIMMYT) U.ROSYARA@cgiar.org

JULIANA, Philomin (CIMMYT) <P.JULIANA@cgiar.org>; CROSSA HIRIART, José Luis Francisco (CIMMYT) <J.CROSSA@CGIAR.ORG>; DREISIGACKER, Susanne (CIMMYT) <S.Dreisigacker@cgiar.org>

   

 

Aug

13

9-10 pm

  Cancelled due to conflict with GOBii annual meeting    

 

Sept

10

10-11am

 

 G.E.M.STM: Enabling Agricultural Innovation and the International Agroinformatics Alliance

YouTube link: https://youtu.be/5xzLZkAIv5g


PDF slides: https://drive.google.com/file/d/12pXY0K83R2GB_GNOfTxjblkb8WKIKdpb/view

 Kevin Silverstein <kats@umn.edu>   

 

Oct

15

10-11am

 
 Genotypic Data and Sample Quality Control: Workflow Development and Implementation in Wheat

YouTube link: https://youtu.be/98bOmnV6lkM

PDF slides:

View file
nameGenotypic data_Sample_QC_Workflow_development_Implementation_in_CIMMYT_Wheat_GOBii_seminar_Umesh_Rosyara.pdf
height250

  ROSYARA, Umesh (CIMMYT) <U.ROSYARA@cgiar.org>    

 

Nov

26

10-11am

 

 Informatics Visualization Software
Tools and technologies to assist crop breeding

You Tube Link:

https://youtu.be/AP-NBFJ43qY

Slides:

http://bioinf.hutton.ac.uk/flapjack/gobii-november.pptx


Iain Milne <Iain.Milne@hutton.ac.uk>

   

 

Dec

10

10-11am

   Excellence in Breeding Platform-CENCELLED  QUINN, Michael Gavin (CIMMYT) <M.QUINN@cgiar.org>   

 2019

 Jan

 28

 10-11am

 Umesh

 Genomic assisted hybrid wheat breeding

PDF: Genomic assisted hybrid wheat breeding progress and prospects at CIMMYT.pdf

YouTube:

Widget Connector
urlhttp://youtube.com/watch?v=4Ybf2c6J6io

About 50 restorer male lines (T. timopheevii R-lines) developed by CIMMYT hybrid wheat program are available for interested users. To request the seed please contact b.r.basnet@cgiar.org or CIMMYT germplasm bank


 

Dr. Bhoja Basnet (B.R.Basnet@cgiar.org) and team

   

Feb

25

10-11am

Sam Storr

Excellence in Breeding Toolbox http://excellenceinbreeding.org/toolbox

Widget Connector
urlhttp://youtube.com/watch?v=cV_WPvlsWkc

Sam Storr from CIMMYT S.STORR@cgiar.org



March

25

10-11am

John Carlos Ignacio

Mate and Check: A Practical Approach to Identifying F1 Hybrids

Widget Connector
urlhttp://youtube.com/watch?v=Dbg11VPowi0

John Carlos Ignacio (IRRI) <j.ignacio@irri.org>



April

22

10-11am

Pancho/Philomin

Multi-trait Multi-environment Deep learning Genomic-enabled Prediction in Plant Breeding

https://youtu.be/Ad_BiAaLoMw

CROSSA HIRIART, José Luis Francisco (CIMMYT) <J.CROSSA@CGIAR.ORG>

JULIANA, Philomin (CIMMYT) <P.JULIANA@cgiar.org>





May

20

10-11am

Moira/Star

BreeDBase: a digital ecosystem for plant breeding

Widget Connector
urlhttp://youtube.com/watch?v=l8Zus415TAI

Breedbase_seminar_GB.pdf

Guillaume Jean Bauchet <gjb99@cornell.edu>

Lukas A. Mueller <lam87@cornell.edu>





June

10

10-11am

M5-CoP

Learning by doing: From Soil Science to Data Science

YouTube:

Widget Connector
urlhttps://www.youtube.com/watch?v=hUv8_I2I7uU

Here are some of the links asked at the webinar and David provided as below:

Here is the link to the housing and cropland map that David Guerena's team produced for Nepal. 

 Here is the link to the hand-held spectrometer.

David Guerena (CIMMYT)



July

22

10-11am

M5-CoP

EiB Sabbatical Automated UI Testing Framework and  B4R QC Process

Jahzeel Ramos (IRRI) and Dolores Dolores Pagtananan (IRRI)



August

26

10-11am

Buckler Group

Breaking the curse of dimensionality to identify causal variants in Breeding 4.0

View file
nameBreaking the curse of dimensionality.pdf
height250

Youtube:

Widget Connector
urlhttps://www.youtube.com/watch?v=4XUIkeigdDs&feature=youtu.be

Guillaume Ramstein <gr226@cornell.edu>



September

16

10-11am

Hima

Integrated multi-omics data identifies a thermo-sensitive male sterile line for two-line hybrid system in pigeonpea

Widget Connector
urlhttps://www.youtube.com/watch?v=tdKmmVcJWeM&feature=youtu.be

Pazhamala, Lekha (L.Pazhamala@cgiar.org)



October

21

10-11am

M5-CoP

BMS

overview and implementation of continuous inspection (Sonarqube

new features and progress towards an API driven development

Widget Connector
urlhttp://youtube.com/watch?v=CxMlmP705eE

PDF:

View file
name10.21 EiB_GOBii Webinar-BMS new features and progress towards an API driven development.pdf
height250

CRIMI, Mariano Omar (IBP) <M.CRIMI@cgiar.org> and Jan Erik Backlund (J.BACKLUND@cgiar.org)



November

11

10-11am

M5-CoPThinking Backwards for Impact (Product Design and Management)George Kotch - EiB Module 1



December

TBD

10-11am

M5-CoPTBD



2020

Jan









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