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The following formulation is performed on all zygotes to calculate Chisq using lookup tables in the Germplasm Population Distributions section below:

 

 

 

 


Metadata Fields Provided

 

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Dominant Nucleotide only. Two sets of statistics are calculated: Major-Pairing and Minor-Pairing. 

 

Germplasm_type

Major-Pairing Major Allele ratio

Major-Pairing Minor Allele ratio

Minor-Pairing Major Allele ratio

Minor-Pairing Minor Allele ratio

RH

0.5

0.5

0.5

0.5

RIL

0.5

0.5

0.5

0.5

F2

0.75

0.25

0.25

0.75

F3

0.625

0.375

0.375

0.625

F4

0.5625

0.4375

0.4375

0.5625

F5

0.53125

0.46875

0.46875

0.53125

F6

0.515625

0.484375

0.484375

0.515625

F7

0.5078125

0.4921875

0.4921875

0.5078125

F8

0.50390625

0.49609375

0.49609375

0.50390625

F9

0.501953125

0.498046875

0.498046875

0.501953125

BC1F1

1

0

0.5

0.5

BC2F1

1

0

0.75

0.25

BC3F1

1

0

0.875

0.125

BC4F1

1

0

0.9375

0.0625

BC5F1

1

0

0.96875

0.03125

BC6F1

1

0

0.984375

0.015625

BC7F1

1

0

0.9921875

0.0078125

BC8F1

1

0

0.99609375

0.00390625

BC1F2

0.875

0.125

0.625

0.375

BC2F2

0.9375

0.0625

0.8125

0.1875

BC3F2

0.96875

0.03125

0.90625

0.09375

BC4F2

0.984375

0.015625

0.953125

0.046875

BC5F2

0.9921875

0.0078125

0.9765625

0.0234375

BC6F2

0.99609375

0.00390625

0.98828125

0.01171875

BC7F2

0.998046875

0.001953125

0.994140625

0.005859375

BC8F2

0.999023438

0.000976563

0.997070313

0.002929688

BC1F3

0.8125

0.1875

0.6875

0.3125

BC2F3

0.90625

0.09375

0.84375

0.15625

BC3F3

0.953125

0.046875

0.921875

0.078125

BC4F3

0.9765625

0.0234375

0.9609375

0.0390625

BC5F3

0.98828125

0.01171875

0.98046875

0.01953125

BC6F3

0.994140625

0.005859375

0.990234375

0.009765625

BC7F3

0.997070313

0.002929688

0.995117188

0.004882813

BC8F3

0.998535156

0.001464844

0.997558594

0.002441406

BC1F4

0.78125

0.21875

0.71875

0.28125

BC2F4

0.890625

0.109375

0.859375

0.140625

BC3F4

0.9453125

0.0546875

0.9296875

0.0703125

BC4F4

0.97265625

0.02734375

0.96484375

0.03515625

BC5F4

0.986328125

0.013671875

0.982421875

0.017578125

BC6F4

0.993164063

0.006835938

0.991210938

0.008789063

BC7F4

0.996582031

0.003417969

0.995605469

0.004394531

BC8F4

0.998291016

0.001708984

0.997802734

0.002197266

BC1F5

0.765625

0.234375

0.734375

0.265625

BC2F5

0.8828125

0.1171875

0.8671875

0.1328125

BC3F5

0.94140625

0.05859375

0.93359375

0.06640625

BC4F5

0.970703125

0.029296875

0.966796875

0.033203125

BC5F5

0.985351563

0.014648438

0.983398438

0.016601563

BC6F5

0.992675781

0.007324219

0.991699219

0.008300781

BC7F5

0.996337891

0.003662109

0.995849609

0.004150391

BC8F5

0.998168945

0.001831055

0.997924805

0.002075195

BC1F6

0.7578125

0.2421875

0.7421875

0.2578125

BC2F6

0.87890625

0.12109375

0.87109375

0.12890625

BC3F6

0.939453125

0.060546875

0.935546875

0.064453125

BC4F6

0.969726563

0.030273438

0.967773438

0.032226563

BC5F6

0.984863281

0.015136719

0.983886719

0.016113281

BC6F6

0.992431641

0.007568359

0.991943359

0.008056641

BC7F6

0.99621582

0.00378418

0.99597168

0.00402832

BC8F6

0.99810791

0.00189209

0.99798584

0.00201416

BC1F7

0.75390625

0.24609375

0.74609375

0.25390625

BC2F7

0.876953125

0.123046875

0.873046875

0.126953125

BC3F7

0.938476563

0.061523438

0.936523438

0.063476563

BC4F7

0.969238281

0.030761719

0.968261719

0.031738281

BC5F7

0.984619141

0.015380859

0.984130859

0.015869141

BC6F7

0.99230957

0.00769043

0.99206543

0.00793457

BC7F7

0.996154785

0.003845215

0.996032715

0.003967285

BC8F7

0.998077393

0.001922607

0.998016357

0.001983643

BC1F8

0.751953125

0.248046875

0.748046875

0.251953125

BC2F8

0.875976563

0.124023438

0.874023438

0.125976563

BC3F8

0.937988281

0.062011719

0.937011719

0.062988281

BC4F8

0.968994141

0.031005859

0.968505859

0.031494141

BC5F8

0.98449707

0.01550293

0.98425293

0.01574707

BC6F8

0.992248535

0.007751465

0.992126465

0.007873535

BC7F8

0.996124268

0.003875732

0.996063232

0.003936768

BC8F8

0.998062134

0.001937866

0.998031616

0.001968384

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